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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_65350_65544_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65350 - 65544
Intron Length:
195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
TTGTCTCTTACA
Flanking Amino Acid:
TARKLADSNKLKLTPEYLEL
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
80.5
33.9
Major BPS
69.2
0.48
1
61
37.1
Major PPT
90.8
0.92
0.6
88.2
21.6
Minor 5ss
36.6
-1.5
2.9
49.5
46.5
Minor BPS
54.9
0.15
2
71.87
40.1

Associated Gene:

Gene:
ERLIN1
Ensembl Gene ID:
ENSAPLG00000012553
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013083
46851 - 65794
18944