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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_654338_656613_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
654338 - 656613
Intron Length:
2276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTCCTTTAATC
Flanking Amino Acid:
EVPPAAPAFPGYTIANAAAT
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
87.4
0.84
0.6
82
22.8
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
79.9
0.92
1
83.67
28.8

Associated Gene:

Gene:
A1CF
Ensembl Gene ID:
ENSAPLG00000002964
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003020
654186 - 676600
22415