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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_656748_657410_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
656748 - 657410
Intron Length:
663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATGTAAC
5'SS Class:
major
3'SS Sequence:
GCTGTGTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
CAAAACAAAACA
Flanking Amino Acid:
IPALASQNPTIHPFTPPKLS
Intron Amino Acid Position:
487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
76.1
32.8
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
71.2
0.48
1
63.8
41.7
Minor 5ss
44.5
-0.6
2.5
58.4
39.6
Minor BPS
41.2
-0.6
2
48.49
41

Associated Gene:

Gene:
A1CF
Ensembl Gene ID:
ENSAPLG00000002964
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003020
654186 - 676600
22415