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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_657548_660109_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
657548 - 660109
Intron Length:
2562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
CAACAATTAACC
Flanking Amino Acid:
KPQGIKLAPQILEEICQKNN
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
77.1
0.61
0.7
69.8
31
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
48.4
-0.1
1.8
56.82
40.5

Associated Gene:

Gene:
A1CF
Ensembl Gene ID:
ENSAPLG00000002964
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003020
654186 - 676600
22415