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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_665308_665629_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
665308 - 665629
Intron Length:
322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAACC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGAAAAAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
TCTTCTTGAAAA
Flanking Amino Acid:
IEKEFNSIKQELLKQLGDFS
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
72.5
37.3
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
46.1
-0.2
1.7
48.7
42.2
Minor 5ss
33.3
-1.9
3.1
43.9
43.5
Minor BPS
64.6
0.46
1.5
73.41
38.3

Associated Gene:

Gene:
A1CF
Ensembl Gene ID:
ENSAPLG00000002964
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003020
654186 - 676600
22415