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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_6661099_6670668_F

Intron Information:

Intron Rank:
2
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
6661099 - 6670668
Intron Length:
9570

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
CAA|ATATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
CAACCTTTGACAC|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GAATCCTTAACC
Flanking Amino Acid:
LHTLTLNKNQITELESLLDH
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
34.5
-0.9
3.4
56
43.9
Major BPS
100
1.24
0.5
100
0
Major PPT
38.3
-0.6
3.2
52.7
41.1
Minor 5ss
99.7
1.65
0.6
98.9
3.35
Minor BPS
80.1
0.92
1.1
77.97
36.8

Associated Gene:

Gene:
LRMDA
Ensembl Gene ID:
ENSAPLG00000012993
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013525
6535780 - 6966178
430399