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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_6670809_6681089_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6670809 - 6681089
Intron Length:
10281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
TATTACTGGATT
Flanking Amino Acid:
EKDEDDYQRYRYFVLHKLTN
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
1
86.4
29.2
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
69.5
0.44
1.1
65.2
41.2
Minor 5ss
35
-1.7
3.3
50
46.3
Minor BPS
58.8
0.36
1.7
77.98
38.1

Associated Gene:

Gene:
LRMDA
Ensembl Gene ID:
ENSAPLG00000012993
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013525
6535780 - 6966178
430399