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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_6681217_6862299_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6681217 - 6862299
Intron Length:
181083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTACACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTTGTTTTATTA
Flanking Amino Acid:
MKVVKPKDAKASNEAASLSP
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
66
40.1
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
81
0.7
0.9
76.8
36.1
Minor 5ss
28.4
-2.5
3.5
37
47.6
Minor BPS
57.3
0.23
1.6
69.82
37.7

Associated Gene:

Gene:
LRMDA
Ensembl Gene ID:
ENSAPLG00000012993
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013525
6535780 - 6966178
430399