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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_669144_670691_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
669144 - 670691
Intron Length:
1548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGAATG
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
GGGTCCTGACAA
Flanking Amino Acid:
AIKQLNNYEIRNGRLLGVCA
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
80.6
33.8
Major BPS
79.4
0.73
1
80.1
32
Major PPT
85.9
0.81
0.7
81
30.7
Minor 5ss
31.6
-2.1
3
39.4
46.1
Minor BPS
47
-0.2
1.8
55.43
42.7

Associated Gene:

Gene:
A1CF
Ensembl Gene ID:
ENSAPLG00000002964
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003020
654186 - 676600
22415