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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_671705_674260_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
671705 - 674260
Intron Length:
2556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAACT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCATGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCCTCCATG
Flanking Amino Acid:
IQRTGYNLIQENGQRKYGGP
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
78.1
36.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
69.6
0.44
1
65.7
34.6
Minor 5ss
34.7
-1.7
3.3
49.7
46.3
Minor BPS
58.5
0.12
2.1
71.5
41.9

Associated Gene:

Gene:
A1CF
Ensembl Gene ID:
ENSAPLG00000002964
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034607
670688 - 679045
8358