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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_6862385_6966098_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6862385 - 6966098
Intron Length:
103714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAACT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
GCTTTCCTAATT
Flanking Amino Acid:
SGSRDLTNHRGILGKCRYIY
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
79.9
32.9
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
78.5
0.64
0.8
74
31.2
Minor 5ss
42.2
-0.9
2.8
58.8
45.4
Minor BPS
62.4
0.47
1.7
76.83
40

Associated Gene:

Gene:
LRMDA
Ensembl Gene ID:
ENSAPLG00000012993
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013525
6535780 - 6966178
430399