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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_70457_70572_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70457 - 70572
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCGTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTCAC
U12 Branch Point Sequence:
ACCCCACCAACA
Flanking Amino Acid:
QPCTSLVLPQLDIPPKAALK
Intron Amino Acid Position:
855

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
74.8
38.1
Major BPS
63.6
0.34
1
65.3
32.1
Major PPT
88.4
0.86
0.7
83.9
31.1
Minor 5ss
40.1
-1.1
3.1
55.9
48.3
Minor BPS
41.6
-0.6
2
49.79
40.6

Associated Gene:

Gene:
ADAM8
Ensembl Gene ID:
ENSAPLG00000012822
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013413
70406 - 83569
13164