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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_70678_70800_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70678 - 70800
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCTGCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAC
U12 Branch Point Sequence:
GTCCACTTCACT
Flanking Amino Acid:
KPLPALKRKEPCGVVAGAAS
Intron Amino Acid Position:
820

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
77.2
32.8
Major BPS
68.7
0.46
1
71.3
34
Major PPT
67.6
0.4
0.9
59.9
35.4
Minor 5ss
32.6
-2
3.4
44.1
43.8
Minor BPS
51.5
0.13
2
71.33
45

Associated Gene:

Gene:
ADAM8
Ensembl Gene ID:
ENSAPLG00000012822
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013413
70406 - 83569
13164