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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_7104117_7104996_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7104117 - 7104996
Intron Length:
880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTCTTTATTT
Flanking Amino Acid:
HLSTPSQCTKRYVITNPPYE
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
71.9
39.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.8
0.85
0.8
80.2
37.3
Minor 5ss
35
-1.7
2.9
43.6
43.3
Minor BPS
69.3
0.68
1.6
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013104
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013824
7103867 - 7148988
45122