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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_7114077_7117368_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7114077 - 7117368
Intron Length:
3292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
ATTATGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTATTA
Flanking Amino Acid:
GANIPIITELVNDSNVQFLD
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.1
0.7
0.9
77.5
41
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
55.4
0.17
1.8
70.42
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013104
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013824
7103867 - 7148988
45122