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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_7142599_7145556_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7142599 - 7145556
Intron Length:
2958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TCTCCCTTGTCT
Flanking Amino Acid:
PAKDIEKVILTRSEAAMTVL
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
77.1
37.8
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
89.5
0.89
0.7
88.9
28.2
Minor 5ss
37.1
-1.5
3.1
48.8
41.4
Minor BPS
48.1
-0
3.5
80.72
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013104
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013824
7103867 - 7148988
45122