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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_71926_72009_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71926 - 72009
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CACCCACCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
GTGCTCAGAGCC
Flanking Amino Acid:
PTGTKCGEEMVCYAGRCQNL
Intron Amino Acid Position:
630

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
68.4
36.9
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
61.6
0.26
0.9
50.7
32.6
Minor 5ss
27.7
-2.6
3
31.6
37.6
Minor BPS
41.8
-0.6
1.8
50.55
39.4

Associated Gene:

Gene:
ADAM8
Ensembl Gene ID:
ENSAPLG00000012822
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013413
70406 - 83569
13164