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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_7198690_7211292_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7198690 - 7211292
Intron Length:
12603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATCGAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTTGTTTCATC
Flanking Amino Acid:
IEYKSEKRESSILINPGNHV
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
77.1
37.8
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
70.4
0.46
1
66.9
38.9
Minor 5ss
42.9
-0.8
2.8
59.8
44.7
Minor BPS
54.3
0.12
2.1
73.34
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017227
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029926
7198599 - 7228369
29771