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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_7211362_7213546_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7211362 - 7213546
Intron Length:
2185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TGTCTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TGAAAAAGAACT
Flanking Amino Acid:
FVGLSFPAVCELVFAKLKLL
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.7
40.1
Major BPS
75.5
0.63
1
66
40.9
Major PPT
85.9
0.81
0.8
80.9
31.1
Minor 5ss
36.4
-1.5
2.7
38.9
40.3
Minor BPS
40.8
-0.6
2
59.74
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017227
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029926
7198599 - 7228369
29771