Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_7249685_7251345_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7249685 - 7251345

Intron Length:

1661

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAAATAA

5'SS Class:

major

3'SS Sequence:

ATCTTCTTCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAG

U12 Branch Point Sequence:

TGTCTCCTATCT

Flanking Amino Acid:

FMVFFILGGLAMFASYVPEI

Intron Amino Acid Position:

314

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.9

0.59

31.3

Major BPS

72.5

0.56

1.5

71.7

44.6

Major PPT

78.4

0.64

0.7

77.4

30.6

Minor 5ss

36.7

-1.5

3.1

43.7

45.9

Minor BPS

50.7

0.1

1.9

74.9

41.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019122

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043009

7234182 - 7557853

323672

ENSAPLT00000031529

7249341 - 7557853

308513