About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_7347197_7430583_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7347197 - 7430583
Intron Length:
83387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
CTGTTAATAATC
Flanking Amino Acid:
SAQTLTGRVLVVLVFALSIG
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
82.6
30.5
Major BPS
80
0.75
1
78.6
31
Major PPT
91.7
0.94
0.6
88.8
20.4
Minor 5ss
48.7
-0.1
2.8
73.2
37.2
Minor BPS
48
-0.1
1.9
59.64
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019122
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043009
7234182 - 7557853
323672
ENSAPLT00000031529
7249341 - 7557853
308513