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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_7636234_7637347_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7636234 - 7637347
Intron Length:
1114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTGAGTGAC
5'SS Class:
major
3'SS Sequence:
TGTTTCATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GTGTGTTGAAAT
Flanking Amino Acid:
LERGQIPSKYMMDQEFYRRH
Intron Amino Acid Position:
1756

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
73.9
29.8
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
79.8
0.67
0.8
74.8
34.7
Minor 5ss
30
-2.3
3.2
39
39.9
Minor BPS
47.9
-0
2
66.73
43.8

Associated Gene:

Gene:
DLG5
Ensembl Gene ID:
ENSAPLG00000015221
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038035
7629889 - 7735803
105915
ENSAPLT00000015909
7629889 - 7735803
105915