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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_7639601_7640155_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7639601 - 7640155
Intron Length:
555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTATTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATATTTTTATTT
Flanking Amino Acid:
MYQLGNHSRSSSRLEPVSNH
Intron Amino Acid Position:
1533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85
0.79
0.7
86.7
25.9
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
60.2
0.4
1.5
74.31
37.1

Associated Gene:

Gene:
DLG5
Ensembl Gene ID:
ENSAPLG00000015221
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038035
7629889 - 7735803
105915
ENSAPLT00000015909
7629889 - 7735803
105915