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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_7640290_7641218_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7640290 - 7641218
Intron Length:
929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTCATA
Flanking Amino Acid:
GLEYGDQLLEFNGINLRNAT
Intron Amino Acid Position:
1489

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
87.2
27.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
90.2
0.9
0.6
87.8
22.4
Minor 5ss
38.7
-1.3
3.4
58.4
46.2
Minor BPS
64.7
0.46
1.7
78
33.3

Associated Gene:

Gene:
DLG5
Ensembl Gene ID:
ENSAPLG00000015221
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038035
7629889 - 7735803
105915
ENSAPLT00000015909
7629889 - 7735803
105915