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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_7641382_7642030_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7641382 - 7642030
Intron Length:
649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGCCTG
5'SS Class:
major
3'SS Sequence:
TCTCCTCTAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TCAGTTTTAACT
Flanking Amino Acid:
RPRFSSLRSLRPYMEEPRHV
Intron Amino Acid Position:
1460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.7
0.37
1.3
55.7
48.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
66
0.36
1
67.8
31.2
Minor 5ss
36.4
-1.5
3.3
47.5
48
Minor BPS
66.3
0.59
1.4
75.56
41.8

Associated Gene:

Gene:
DLG5
Ensembl Gene ID:
ENSAPLG00000015221
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038035
7629889 - 7735803
105915