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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_7642109_7645068_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7642109 - 7645068
Intron Length:
2960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGTCC
5'SS Class:
strong_major
3'SS Sequence:
CTACGTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CTCTTCTCAAAT
Flanking Amino Acid:
PVSVGERRKDRYLFRNRSFL
Intron Amino Acid Position:
1434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.6
33.4
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
76.8
0.6
0.9
73
37.1
Minor 5ss
38
-1.4
3.2
50.9
45.8
Minor BPS
57.5
0.32
1.7
72.8
44.1

Associated Gene:

Gene:
DLG5
Ensembl Gene ID:
ENSAPLG00000015221
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038035
7629889 - 7735803
105915