About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_7645238_7646542_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7645238 - 7646542
Intron Length:
1305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAATTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTTTCTTTTATA
Flanking Amino Acid:
YPRSIVGSDRGSLSHSECSS
Intron Amino Acid Position:
1378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
82.5
24.8
Major BPS
84
0.85
0.9
75
39.9
Major PPT
91.5
0.93
0.6
88
22
Minor 5ss
35.8
-1.6
3
48.7
47.5
Minor BPS
72.9
0.71
1.5
82.82
31.5

Associated Gene:

Gene:
DLG5
Ensembl Gene ID:
ENSAPLG00000015221
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038035
7629889 - 7735803
105915
ENSAPLT00000015909
7629889 - 7735803
105915