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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_76586_76658_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76586 - 76658
Intron Length:
73

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGCAGG
5'SS Class:
major
3'SS Sequence:
TTCCTTCCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTCCAT
U12 Branch Point Sequence:
TTTTCCTTCCCA
Flanking Amino Acid:
RKQHDNAQLITGVDFYDTTV
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.3
63.6
48.1
Major BPS
68.5
0.46
1.2
78.5
35.1
Major PPT
81.1
0.7
0.7
76.1
26.1
Minor 5ss
40.2
-1.1
2.8
48
41.3
Minor BPS
48.9
-0
3.6
83.03
38.2

Associated Gene:

Gene:
ADAM8
Ensembl Gene ID:
ENSAPLG00000012822
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013413
70406 - 83569
13164