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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_77381_77469_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77381 - 77469
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
GTCCTTCCCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGGGAA
U12 Branch Point Sequence:
AACTTGGGAATC
Flanking Amino Acid:
ELVLVVDNEEFRKYKDLHRV
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73
38.2
Major BPS
48.8
-0
1.5
49.1
46.3
Major PPT
69.8
0.45
0.8
62
34.8
Minor 5ss
28.6
-2.5
3.5
36.8
47.7
Minor BPS
37.5
-0.9
2.4
45.71
37.3

Associated Gene:

Gene:
ADAM8
Ensembl Gene ID:
ENSAPLG00000012822
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013413
70406 - 83569
13164