Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_7754974_7755326_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7754974 - 7755326

Intron Length:

353

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATGTTT

5'SS Class:

strong_major

3'SS Sequence:

ATCTTTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTATGAAGT

Flanking Amino Acid:

TKTSSNNTYEVEKTLGIEAA

Intron Amino Acid Position:

1240

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

81.4

Major BPS

96.5

1.15

0.6

34.2

Major PPT

88.9

0.87

0.7

84.4

29.7

Minor 5ss

42.7

-0.8

3.4

64.6

46.7

Minor BPS

55.8

0.26

81.73

39.5

Associated Gene:

Gene:

POLR3A

Ensembl Gene ID:

ENSAPLG00000015878

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030138

7750135 - 7780885

30751

ENSAPLT00000016630

7750135 - 7784933

34799