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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_7756868_7756968_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7756868 - 7756968
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTTTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTCACATACTA
Flanking Amino Acid:
GRIEKTLLGEISEYIEEVFL
Intron Amino Acid Position:
1099

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
75.1
0.56
1
79
33.3
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
47.6
-0.1
2
66.97
39.2

Associated Gene:

Gene:
POLR3A
Ensembl Gene ID:
ENSAPLG00000015878
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030138
7750135 - 7780885
30751
ENSAPLT00000016630
7750135 - 7784933
34799