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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_7759565_7762973_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7759565 - 7762973
Intron Length:
3409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTGTA
5'SS Class:
strong_major
3'SS Sequence:
CATGTAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATGTAATT
Flanking Amino Acid:
TETGYEKYNEEIKKFIKGVS
Intron Amino Acid Position:
741

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
83.4
28.2
Major BPS
100
1.24
0.5
100
0
Major PPT
72
0.5
1
67.2
42.5
Minor 5ss
36.3
-1.5
3.3
49.5
46.6
Minor BPS
51.4
0.12
2.1
78.07
38.6

Associated Gene:

Gene:
POLR3A
Ensembl Gene ID:
ENSAPLG00000015878
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030138
7750135 - 7780885
30751