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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_7763010_7764282_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7763010 - 7764282
Intron Length:
1273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGCCA
5'SS Class:
major
3'SS Sequence:
TTCGTCCTTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TCGTCCTTGAAG
Flanking Amino Acid:
FLCCRDSFLQTLTETGYEKY
Intron Amino Acid Position:
729

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
61.7
38.5
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
71.4
0.48
1
71.7
33.2
Minor 5ss
24.9
-2.9
3.1
30.5
42.8
Minor BPS
63.6
0.28
1.6
63.47
44.6

Associated Gene:

Gene:
POLR3A
Ensembl Gene ID:
ENSAPLG00000015878
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030138
7750135 - 7780885
30751