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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_7769668_7770832_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7769668 - 7770832
Intron Length:
1165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGGATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTCTTGGATT
Flanking Amino Acid:
PGCTAEETLEALILKELSVI
Intron Amino Acid Position:
736

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
84.2
33.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
77.7
0.62
0.9
73.7
40.5
Minor 5ss
44.7
-0.6
3.1
66
45.2
Minor BPS
70.8
0.73
1.4
87.49
31.6

Associated Gene:

Gene:
POLR3A
Ensembl Gene ID:
ENSAPLG00000015878
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030138
7750135 - 7780885
30751
ENSAPLT00000016630
7750135 - 7784933
34799