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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_7783088_7783945_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7783088 - 7783945
Intron Length:
858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACATA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCAGTGGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTATCAT
U12 Branch Point Sequence:
ATCTGCAAAACC
Flanking Amino Acid:
YFKAVIGILQKKKQFLDYLK
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80.4
34.2
Major BPS
70.5
0.51
1.3
74
41.2
Major PPT
55
0.11
1.2
56.9
42.7
Minor 5ss
42.3
-0.8
3
57.2
47.1
Minor BPS
45.7
-0.3
2.3
61.3
44

Associated Gene:

Gene:
POLR3A
Ensembl Gene ID:
ENSAPLG00000015878
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016630
7750135 - 7784933
34799