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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_7786114_7786465_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7786114 - 7786465
Intron Length:
352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAAATA
5'SS Class:
major
3'SS Sequence:
AATTTGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTTTATAACA
Flanking Amino Acid:
TNRLLQRKQMVIDVLHPGKA
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
75.9
33
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77
0.61
0.9
74.3
40.5
Minor 5ss
36.5
-1.5
3.1
45.8
43.6
Minor BPS
65.7
0.49
1.6
76.59
34

Associated Gene:

Gene:
RPS24
Ensembl Gene ID:
ENSAPLG00000016258
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019988
7785332 - 7789782
4451
ENSAPLT00000016962
7785332 - 7791053
5722
ENSAPLT00000040301
7785332 - 7788153
2822