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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_7786676_7787158_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7786676 - 7787158
Intron Length:
483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTTTT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTAATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
TTTTTTTTAATA
Flanking Amino Acid:
KNEPKHRLARHGLYEKKKTS
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
78.8
38.3
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
86.6
0.82
0.7
85.3
27.9
Minor 5ss
44.3
-0.6
3.2
57.9
46.7
Minor BPS
82.2
1.01
0.9
86.33
25.3

Associated Gene:

Gene:
RPS24
Ensembl Gene ID:
ENSAPLG00000016258
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019988
7785332 - 7789782
4451
ENSAPLT00000016962
7785332 - 7791053
5722
ENSAPLT00000040301
7785332 - 7788153
2822