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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_7787270_7788135_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7787270 - 7788135
Intron Length:
866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATGA
5'SS Class:
strong_major
3'SS Sequence:
GACTCTTCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTTTTTCTACTT
Flanking Amino Acid:
AKASVGAGKKK*
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.7
39.1
Major BPS
77.5
0.68
1
79.6
33
Major PPT
68.8
0.42
1
66.8
39
Minor 5ss
35.9
-1.6
3.3
47.3
48.1
Minor BPS
54.5
0.22
1.9
79.49
37.4

Associated Gene:

Gene:
RPS24
Ensembl Gene ID:
ENSAPLG00000016258
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040301
7785332 - 7788153
2822