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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_7787270_7790030_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7787270 - 7790030
Intron Length:
2761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTCTCTTAGCA
Flanking Amino Acid:
AKASVGAGKK*
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.7
39.1
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
96.8
1.05
0.5
96.1
13.2
Minor 5ss
35.9
-1.6
3.3
47.3
48.1
Minor BPS
70.1
0.63
1.5
80.69
34.7

Associated Gene:

Gene:
RPS24
Ensembl Gene ID:
ENSAPLG00000016258
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016962
7785332 - 7791053
5722