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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_78110_78912_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78110 - 78912
Intron Length:
803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAT
U12 Branch Point Sequence:
CCAGCCTGATGC
Flanking Amino Acid:
AASISTCGGLSGFFHVNETT
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
69
41.8
Major BPS
61
0.27
1.3
53.3
44.2
Major PPT
79
0.65
0.9
76.3
32.2
Minor 5ss
33.2
-1.9
3.4
48.6
47.1
Minor BPS
40.8
-0.7
2
43.28
44.2

Associated Gene:

Gene:
ADAM8
Ensembl Gene ID:
ENSAPLG00000012822
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013413
70406 - 83569
13164