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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_79907_80200_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79907 - 80200
Intron Length:
294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGATCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTTTTCTGATCT
Flanking Amino Acid:
RDYLLHLEKNRELLGQHYTE
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
80
0.67
0.9
73.8
35.8
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
61.1
0.43
1.8
80.23
41.8

Associated Gene:

Gene:
ADAM8
Ensembl Gene ID:
ENSAPLG00000012822
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013413
70406 - 83569
13164