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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_82726_83508_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82726 - 83508
Intron Length:
783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGAACG
5'SS Class:
major
3'SS Sequence:
TTGAATTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GAATTTTGAATT
Flanking Amino Acid:
GLLLLLLLGHGVSSGPEEEL
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
65.5
40.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
74.4
0.55
0.9
66.2
44.8
Minor 5ss
28.8
-2.4
2.8
33.9
41
Minor BPS
56.3
0.28
1.4
67.33
37.3

Associated Gene:

Gene:
ADAM8
Ensembl Gene ID:
ENSAPLG00000012822
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013413
70406 - 83569
13164