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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_8506288_8576059_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
8506288 - 8576059
Intron Length:
69772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TGATCTTTATTG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.5
40.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
90
0.9
0.7
84.9
29.9
Minor 5ss
32.9
-2
2.9
40.4
45.3
Minor BPS
57.6
0.1
1.7
60.72
41.6

Associated Gene:

Gene:
ZMIZ1
Ensembl Gene ID:
ENSAPLG00000016338
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024533
8439055 - 8732374
293320