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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_85902_95169_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85902 - 95169
Intron Length:
9268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAA
U12 Branch Point Sequence:
GGCTGATGAACT
Flanking Amino Acid:
CEHSMLNIIYRLDFNGFYTE
Intron Amino Acid Position:
839

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
64.9
42.8
Major BPS
60.3
0.26
1.2
51.7
43.9
Major PPT
86.5
0.82
0.7
84.9
30
Minor 5ss
31.8
-2.1
3
37.6
47.1
Minor BPS
46
-0.2
2.1
63.88
45.5

Associated Gene:

Gene:
TUBGCP2
Ensembl Gene ID:
ENSAPLG00000013602
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014248
85796 - 118596
32801