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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_8593625_8606287_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8593625 - 8606287
Intron Length:
12663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTCCG
5'SS Class:
major
3'SS Sequence:
TTTCCCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CTTTCTTTATTT
Flanking Amino Acid:
FEQSLMGCLTVVSRVAAQQG
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
59.3
45.2
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
86.5
0.82
0.7
81.3
23.7
Minor 5ss
41.1
-1
2.7
51.7
44.7
Minor BPS
69.3
0.68
1.6
83.14
39

Associated Gene:

Gene:
ZMIZ1
Ensembl Gene ID:
ENSAPLG00000016338
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024533
8439055 - 8732374
293320