About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_8664_9115_F


Intron Information:

Intron Rank:
7

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
8664 - 9115

Intron Length:
452

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTACTGCTG

5'SS Class:
major

3'SS Sequence:
ATTTTCTAAACAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTCAT

U12 Branch Point Sequence:
ATTTTCTAAACA

Flanking Amino Acid:
KTTKALVCAEEEPACQFFFD

Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
68.5
0.44
1.1
57.3
47

Major BPS
100
1.24
0.5
100
0

Major PPT
74.7
0.56
1
71.1
38.2

Minor 5ss
33.4
-1.9
3.6
47.4
48

Minor BPS
71.8
0.68
1.6
81.19
34.3

Associated Gene:

Gene:
CWF19L1

Ensembl Gene ID:

Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

21 - 14383
14363

1176 - 14383
13208