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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_8682858_8697866_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8682858 - 8697866
Intron Length:
15009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTTCCTAAACA
Flanking Amino Acid:
MSSMKPTLSHSDGSFPYDSV
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.8
81.3
32.8
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
90.6
0.91
0.6
86.8
24
Minor 5ss
33.3
-1.9
3
43.8
43.9
Minor BPS
82
1
1.5
91.36
30.2

Associated Gene:

Gene:
ZMIZ1
Ensembl Gene ID:
ENSAPLG00000016338
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024533
8439055 - 8732374
293320
ENSAPLT00000017059
8651532 - 8731564
80033