Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_8705673_8708087_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8705673 - 8708087

Intron Length:

2415

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAATT

5'SS Class:

strong_major

3'SS Sequence:

ATTTATTTTCTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTTAT

U12 Branch Point Sequence:

TGTTATTTATTT

Flanking Amino Acid:

PTVNMGQYYKPSRPVPVANY

Intron Amino Acid Position:

405

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.06

0.7

93.7

19.9

Major BPS

88.7

0.96

0.8

36.5

Major PPT

81.8

0.72

0.8

74.3

40.5

Minor 5ss

39.4

-1.2

3.1

57.6

46.6

Minor BPS

58.5

0.34

1.8

77.47

39.3

Associated Gene:

Gene:

ZMIZ1

Ensembl Gene ID:

ENSAPLG00000016338

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024533

8439055 - 8732374

293320

ENSAPLT00000017059

8651532 - 8731564

80033