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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_8714629_8715190_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8714629 - 8715190
Intron Length:
562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
TCTTCCTAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCTTCCTAAACA
Flanking Amino Acid:
LLPAEHCITKIKRNFSSVAA
Intron Amino Acid Position:
616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
77.7
33.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
73.7
0.53
0.9
70.1
34.2
Minor 5ss
42
-0.9
3
54.7
43.6
Minor BPS
75.8
0.81
1.6
83.03
38.2

Associated Gene:

Gene:
ZMIZ1
Ensembl Gene ID:
ENSAPLG00000016338
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017059
8651532 - 8731564
80033
ENSAPLT00000024533
8439055 - 8732374
293320