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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_8715714_8717685_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8715714 - 8717685
Intron Length:
1972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAATAC
U12 Branch Point Sequence:
TTTTTCTTTCCT
Flanking Amino Acid:
ERGTWRCPVCNKTALLEGLE
Intron Amino Acid Position:
692

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.9
30
Major BPS
48.1
-0.1
1.1
44.7
36.5
Major PPT
86.4
0.82
0.6
81
31
Minor 5ss
34.7
-1.7
3.2
41.8
38.8
Minor BPS
47.9
-0
3.6
87.49
38.1

Associated Gene:

Gene:
ZMIZ1
Ensembl Gene ID:
ENSAPLG00000016338
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017059
8651532 - 8731564
80033
ENSAPLT00000024533
8439055 - 8732374
293320